Most would use a battery isolator ( such as a sure power 16023a- which is what i have), many are a blue box with 3 or 4 terminals mounted in the engine compartment
as you guess this supplies power from the alternator to the deep cycle "coach" battery when the motor is running and the "chassis" battery is isolated from the coach lights, pumps etc.
an older vehicle is more likely to have had "owner modifications"- I'm sure you will have a good time poking around and discovering what has been done and what needs to be redone.
Mike
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